To reproduce the figures found in Appendix B.2 of "Development of 3D X-ray phase-contrast Imaging and Analysis Tools for Tubular and Branching Structures with Applications in Colorectal Cancer Research"

Run the python script:
Supporting data and analysis\Chapter 6\branchmorphometry\analyseAndVisualiseCryptShapesComparison.ipynb
The figures will be produced and saved in:
Supporting data and analysis\Chapter 6\branchmorphometry\analysis_output-colonic_cross_sections_comparison
and
Supporting data and analysis\Chapter 6\branchmorphometry\analysis_output-morphological_characteristics_comparison